Four single-cell simulation scenarios

The scenario grid used to check the single-cell fit. Two compositions, equal and imbalanced, crossed with equal and unequal cell sizes. Every scenario is drawn at \(G=10\) genes, \(n_i=10^{4}\) cells and platform scales \(a_i\in\{1, 2\}\) (same capture efficiency, or twice the bulk capture of the single-cell platform).

Usage

single_cell_scenario_design()

Value

A list with n_genes, n_cells, platform_scale and scenarios (four named lists with proportions and cell_size).

See also

rescale_single_cell_moments(), simulate_bulk_from_cells()

Examples

names(single_cell_scenario_design()$scenarios)
#> [1] "balanced_equal_size"     "balanced_varying_size"  
#> [3] "imbalanced_equal_size"   "imbalanced_varying_size"